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1

Cryo-EM analysis of a feline coronavirus spike protein reveals a unique structure and camouflaging glycans

Yang, Tzu-Jing, Chang, Yen-Chen, Ko, Tzu-Ping, Draczkowski, Piotr, Chien, Yu-Chun, Chang, Yuan-Chih, Wu, Kuen-Phon, Khoo, Kay-Hooi, Chang, Hui-Wen, Hsu, Shang-Te Danny

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 2.08 MB

english, 2020

2

Folding analysis of the most complex Stevedore’s protein knot

Wang, Iren, Chen, Szu-Yu, Hsu, Shang-Te Danny

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

3

Dissecting the Structure–Activity Relationship of Galectin–Ligand Interactions

Chan, Yi-Chen, Lin, Hsien-Ya, Tu, Zhijay, Kuo, Yen-Hsi, Hsu, Shang-Te, Lin, Chun-Hung

Journal:

International Journal of Molecular Sciences

Year:

2018

Language:

english

File:

PDF, 21.08 MB

english, 2018

4

Untying a Protein Knot by Circular Permutation

Chuang, Ya-Chu, Hu, I-Chen, Lyu, Ping-Chiang, Hsu, Shang-Te Danny

Journal:

Journal of Molecular Biology

Year:

2019

Language:

english

File:

PDF, 3.93 MB

english, 2019

5

Diarylethynyl Amides That Recognize the Parallel Conformation of Genomic Promoter DNA G-Quadruplexes

Dash, Jyotirmayee, Shirude, Pravin S., Hsu, Shang-Te Danny, Balasubramanian, Shankar

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 814 KB

english, 2008

6

Unraveling the Folding Mechanism of the Smallest Knotted Protein, MJ0366

Wang, Iren, Chen, Szu-Yu, Hsu, Shang-Te Danny

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

7

The knotted protein UCH-L1 exhibits partially unfolded forms under native conditions that share common structural features with its kinetic folding intermediates

Lou, Shih-Chi, Wetzel, Svava, Zhang, Hongyu, Crone, Elizabeth W., Lee, Yun-Tzai, Jackson, Sophie E., Hsu, Shang-Te Danny

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 1.14 MB

english, 2016

8

Comparative analysis of the folding dynamics and kinetics of an engineered knotted protein and its variants derived from HP0242 of Helicobacter pylori

Wang, Liang-Wei, Liu, Yu-Nan, Lyu, Ping-Chiang, Jackson, Sophie E, Hsu, Shang-Te Danny

Journal:

Journal of Physics Condensed Matter

Year:

2015

Language:

english

File:

PDF, 16.35 MB

english, 2015

9

Protein knotting through concatenation significantly reduces folding stability

Hsu, Shang-Te Danny

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

10

Comparative folding analyses of unknotted versus trefoil-knotted ornithine transcarbamylases suggest stabilizing effects of protein knots

Sriramoju, Manoj Kumar, Yang, Tzu-Jing, Hsu, Shang-Te Danny

Journal:

Biochemical and Biophysical Research Communications

Year:

2018

Language:

english

File:

PDF, 2.96 MB

english, 2018

11

Collision-Induced Dissociation of Sodiated Glucose, Galactose, Mannose, and the Identification of Anomeric Configuration

Huynh, Hai Thi, Phan, Huu Trong, Hsu, Po-Jen, Chen, Jien-Lian, Nguan, Hock-Seng, Tsai, Shang-Ting, Roongcharoen, Thanthip, Liew, Chia Yen, Ni, Chi-Kung, Kuo, Jer-Lai

Journal:

Physical Chemistry Chemical Physics

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

12

Continuous checkpointing: joining the checkpointing with virtual memory paging

Shang-Te Hsu, Ruei-Chuan Chang

Journal:

Software: Practice and Experience

Year:

1997

Language:

english

File:

PDF, 142 KB

english, 1997

13

An implementation of using remote memory to checkpoint processes

Shang-Te Hsu, Ruei-Chuan Chang

Journal:

Software: Practice and Experience

Year:

1999

Language:

english

File:

PDF, 606 KB

english, 1999

14

A Nonpeptidic Reverse Turn that Promotes Parallel Sheet Structure Stabilized by CH⋅⋅⋅O Hydrogen Bonds in a Cyclopropane γ-Peptide

Christopher R. Jones, M. Khurram N. Qureshi, Fiona R. Truscott, Shang-Te Danny Hsu, Angus J. Morrison, Martin D. Smith

Journal:

Angewandte Chemie

Year:

2008

Language:

english

File:

PDF, 515 KB

english, 2008

15

A Nonpeptidic Reverse Turn that Promotes Parallel Sheet Structure Stabilized by CH⋅⋅⋅O Hydrogen Bonds in a Cyclopropane γ-Peptide

Christopher R. Jones, M. Khurram N. Qureshi, Fiona R. Truscott, Shang-Te Danny Hsu, Angus J. Morrison, Martin D. Smith

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 515 KB

english, 2008

16

The Solution Structure of the AppA BLUF Domain: Insight into the Mechanism of Light-Induced Signaling

Jeffrey S. Grinstead, Shang-Te D. Hsu, Wouter Laan, Alexandre M. J. J. Bonvin, Klaas J. Hellingwerf, Rolf Boelens, Robert Kaptein

Journal:

Year:

2006

Language:

english

File:

PDF, 392 KB

english, 2006

17

ChemInform Abstract: The Folding, Stability and Conformational Dynamics of β-Barrel Fluorescent Proteins

Shang-Te Danny Hsu, Georg Blaser, Sophie E. Jackson

Journal:

Year:

2009

File:

PDF, 12 KB

2009

18

Atomic insight into the CD4 binding-induced conformational changes in HIV-1 gp120

Shang-Te D. Hsu, Alexandre M.J.J. Bonvin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.03 MB

english, 2004

19

1H,15N and13C assignments of the dimeric ribosome binding domain of trigger factor fromEscherichia coli

Shang-Te Danny Hsu, Christopher M. Dobson

Journal:

Biomolecular NMR Assignments

Year:

2009

Language:

english

File:

PDF, 274 KB

english, 2009

20

1H,15N and13C assignments of domain 5 ofDictyostelium

Shang-Te Danny Hsu, Lisa D. Cabrita, John Christodoulou, Christopher M. Dobson

Journal:

Biomolecular NMR Assignments

Year:

2009

Language:

english

File:

PDF, 262 KB

english, 2009

21

1H,15N and13C assignments of yellow fluorescent protein (YFP) Venus

Shang-Te Danny Hsu, Caroline Behrens, Lisa D. Cabrita, Christopher M. Dobson

Journal:

Biomolecular NMR Assignments

Year:

2009

Language:

english

File:

PDF, 499 KB

english, 2009

22

1H,13C and15N assignments of a camelid nanobody directed against human α-synuclein

Anneleen Vuchelen, Elizabeth O’Day, Erwin De Genst, Els Pardon, Lode Wyns, Mireille Dumoulin, Christopher M. Dobson, John Christodoulou, Shang-Te Danny Hsu

Journal:

Biomolecular NMR Assignments

Year:

2009

Language:

english

File:

PDF, 203 KB

english, 2009

23

Backbone assignments of the 26

Fredrik I. Andersson, Sophie E. Jackson, Shang-Te Danny Hsu

Journal:

Biomolecular NMR Assignments

Year:

2010

Language:

english

File:

PDF, 254 KB

english, 2010

24

Chaperone proteostasis in Parkinson's disease: stabilization of the Hsp70/α-synuclein complex by Hip

Bertoncini, Carlos W, Andersson, August, van der Goot, Annemieke T, Hsu, Shang-Te, Fernández-Montesinos, Rafael, de Jong, Jannie, van Ham, Tjakko J, Nollen, Ellen A, Pozo, David, Roodveldt, Cintia

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 1.77 MB

english, 2009

25

The Solution Structure of [d(CGC)r(amamam)d(TTTGCG)]2

Ya-Ping Tsao, Lian-Yong Wang, Shang-Te Hsu, Moti L. Jain, Shan-Ho Chou, Wen-Chang Huang, Jya-Wei Cheng

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 214 KB

english, 2001

26

A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics

Varnai, Peter, Bugaut, Anthony, Reszka, Anthony P., Neidle, Stephen, Hsu, Shang-Te Danny, Balasubramanian, Shankar

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 513 KB

english, 2009

27

1H,13C and15N resonance assignments of human muscle acylphosphatase

Giuliana Fusco, Alfonso De Simone, Shang-Te Danny Hsu, Francesco Bemporad, Michele Vendruscolo, Fabrizio Chiti, Christopher M. Dobson

Journal:

Biomolecular NMR Assignments

Year:

2012

Language:

english

File:

PDF, 319 KB

english, 2012

28

Hydration of [d(CGC)r(aaa)d(TTTGCG)]2

Shang-Te Hsu, Mei-Tsen Chou, Shan-Ho Chou, Wen-Chang Huang, Jya-Wei Cheng

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 261 KB

english, 2000

29

Isolation and structural characterization of epilancin 15X, a novel lantibiotic from a clinical strain of Staphylococcus epidermidis

Miquel B. Ekkelenkamp, Micha Hanssen, Shang-Te Danny Hsu, Ad de Jong, Dana Milatovic, Jan Verhoef, Nico A.J. van Nuland

Journal:

Year:

2005

Language:

english

File:

PDF, 459 KB

english, 2005

30

Structure, Dynamics and Folding of an Immunoglobulin Domain of the Gelation Factor (ABP-120) from Dictyostelium discoideum

Shang-Te Danny Hsu, Lisa D. Cabrita, Paola Fucini, Christopher M. Dobson, John Christodoulou

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 931 KB

english, 2009

31

Towards Multiparametric Fluorescent Imaging of Amyloid Formation: Studies of a YFP Model of α-Synuclein Aggregation

Tjakko J. van Ham, Alessandro Esposito, Janet R. Kumita, Shang-Te D. Hsu, Gabriele S. Kaminski Schierle, Clemens F. Kaminski, Christopher M. Dobson, Ellen A.A. Nollen, Carlos W. Bertoncini

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.93 MB

english, 2010

32

Structure and Properties of a Complex of α-Synuclein and a Single-Domain Camelid Antibody

Erwin J. De Genst, Tim Guilliams, Joke Wellens, Elizabeth M. O'Day, Christopher A. Waudby, Sarah Meehan, Mireille Dumoulin, Shang-Te Danny Hsu, Nunilo Cremades, Koen H.G. Verschueren, Els Pardon, Lode

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.79 MB

english, 2010

33

The Effect of Parkinson's-Disease-Associated Mutations on the Deubiquitinating Enzyme UCH-L1

Fredrik I. Andersson, Elizabeth F. Werrell, Lindsay McMorran, William J.K. Crone, Chittarnajan Das, Shang-Te Danny Hsu, Sophie E. Jackson

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

34

Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex

Bugaut, Anthony, Rodriguez, Raphaël, Kumari, Sunita, Hsu, Shang-Te Danny, Balasubramanian, Shankar

Journal:

Organic & Biomolecular Chemistry

Year:

2010

Language:

english

File:

PDF, 250 KB

english, 2010

35

The nisin–lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics

Hsu, Shang-Te D, Breukink, Eefjan, Tischenko, Eugene, Lutters, Mandy A G, de Kruijff, Ben, Kaptein, Robert, Bonvin, Alexandre M J J, van Nuland, Nico A J

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 680 KB

english, 2004

36

Entropy Calculation of HIV-1 Env gp120, its Receptor CD4, and their Complex: An Analysis of Configurational Entropy Changes upon Complexation

Hsu, Shang-Te D., Peter, Christine, van Gunsteren, Wilfred F., Bonvin, Alexandre M.J.J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 511 KB

english, 2005

37

Characterization and Structural Analyses of Nonspecific Lipid Transfer Protein 1 from Mung Bean †,‡

Lin, Ku-Feng, Liu, Yu-Nan, Hsu, Shang-Te D., Samuel, Dharmaraj, Cheng, Chao-Sheng, Bonvin, Alexandre M. J. J., Lyu, Ping-Chiang

Journal:

Year:

2005

Language:

english

File:

PDF, 744 KB

english, 2005

38

A Small Molecule That Disrupts G-Quadruplex DNA Structure and Enhances Gene Expression

Waller, Zoë A. E., Sewitz, Sven A., Hsu, Shang-Te Danny, Balasubramanian, Shankar

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 2.00 MB

english, 2009

39

The folding, stability and conformational dynamics of β-barrel fluorescent proteins

Hsu, Shang-Te Danny, Blaser, Georg, Jackson, Sophie E.

Journal:

Chemical Society Reviews

Year:

2009

Language:

english

File:

PDF, 2.18 MB

english, 2009

40

NMR assignments of PI3-SH3 domain aided by protonless NMR spectroscopy

Shang-Te Danny Hsu

Journal:

Biomolecular NMR Assignments

Year:

2014

Language:

english

File:

PDF, 602 KB

english, 2014

41

Erratum to: Backbone 1H, 13C and 15N assignments of YibK and a variant containing a unique cysteine residue at C-terminus in 8 M urea-denatured states

Hsieh, Shu-Ju Micky, Mallam, Anna L., Jackson, Sophie E., Hsu, Shang-Te Danny

Journal:

Biomolecular NMR Assignments

Year:

2014

Language:

english

File:

PDF, 112 KB

english, 2014

42

Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

De Simone, Alfonso, Cavalli, Andrea, Hsu, Shang-Te Danny, Vranken, Wim, Vendruscolo, Michele

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.20 MB

english, 2009

43

Local Cooperativity in an Amyloidogenic State of Human Lysozyme Observed at Atomic Resolution

Dhulesia, Anne, Cremades, Nunilo, Kumita, Janet R., Hsu, Shang-Te Danny, Mossuto, Maria F., Dumoulin, Mireille, Nietlispach, Daniel, Akke, Mikael, Salvatella, Xavier, Dobson, Christopher M.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 3.40 MB

english, 2010

44

A Nanobody Binding to Non-Amyloidogenic Regions of the Protein Human Lysozyme Enhances Partial Unfolding but Inhibits Amyloid Fibril Formation

De Genst, Erwin, Chan, Pak-Ho, Pardon, Els, Hsu, Shang-Te D., Kumita, Janet R., Christodoulou, John, Menzer, Linda, Chirgadze, Dimitri Y., Robinson, Carol V., Muyldermans, Serge, Matagne, André, Wyns,

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 4.73 MB

english, 2013

45

Self-Assembly of MinE on the Membrane Underlies Formation of the MinE Ring to Sustain Function of the Escherichia coli Min System

Zheng, Min, Chiang, Ya-Ling, Lee, Hsiao-Lin, Kong, Lih-Ren, Hsu, Shang-Te Danny, Hwang, Ing-Shouh, Rothfield, Lawrence I., Shih, Yu-Ling

Journal:

Journal of Biological Chemistry

Year:

2014

Language:

english

File:

PDF, 5.11 MB

english, 2014

46

Use of Protonless NMR Spectroscopy To Alleviate the Loss of Information Resulting from Exchange-Broadening

Hsu, Shang-Te Danny, Bertoncini, Carlos W., Dobson, Christopher M.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 541 KB

english, 2009

47

Nucleotide Contributions to the Structural Integrity and DNA Replication Initiation Activity of Noncoding Y RNA

Wang, Iren, Kowalski, Madzia P., Langley, Alexander R., Rodriguez, Raphaël, Balasubramanian, Shankar, Hsu, Shang-Te Danny, Krude, Torsten

Journal:

Year:

2014

Language:

english

File:

PDF, 5.75 MB

english, 2014

48

Probing Side-Chain Dynamics of a Ribosome-Bound Nascent Chain Using Methyl NMR Spectroscopy

Hsu, Shang-Te Danny, Cabrita, Lisa D., Fucini, Paola, Christodoulou, John, Dobson, Christopher M.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 987 KB

english, 2009

49

Mapping the Targeted Membrane Pore Formation Mechanism by Solution NMR: The Nisin Z and Lipid II Interaction in SDS Micelles

Hsu, Shang-Te, Breukink, Eefjan, de Kruijff, Ben, Kaptein, Robert, Bonvin, Alexandre M. J. J., van Nuland, Nico A. J.

Journal:

Year:

2002

Language:

english

File:

PDF, 184 KB

english, 2002

50

Transient Tertiary Structure Formation within the Ribosome Exit Port

O’Brien, Edward P., Hsu, Shang-Te Danny, Christodoulou, John, Vendruscolo, Michele, Dobson, Christopher M.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 4.77 MB

english, 2010